Evolutionary statistics toolkit

*Web toolkit version 1.0.2. Click a tool to proceed:

History

Site frequency spectrum (SFS)

Tajima's D analysis

If you find this tool useful, you can cite:

Karagol, A., & Karagol, T. (2024). An Evolutionary Statistics Toolkit for Simplified Sequence Analysis on Web with Client-Side Processing. bioRxiv, 2024-08. doi: https://doi.org/10.1101/2024.08.01.606148
Tajima, F. (1989). Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123:585-595.

Shannon's Entrophy (H)
Calculation

If you find this tool useful, you can cite:

Karagol, A., & Karagol, T. (2024). An Evolutionary Statistics Toolkit for Simplified Sequence Analysis on Web with Client-Side Processing. bioRxiv, 2024-08. doi: https://doi.org/10.1101/2024.08.01.606148
Shannon, C.E. (1948) A Mathematical Theory of Communication. Bell System Technical Journal, 27, 379-423.
http://dx.doi.org/10.1002/j.1538-7305.1948.tb01338.x

Alignment processor for pairwise variation analysis

If you find this tool useful, you can cite:

Karagol, A., & Karagol, T. (2024). An Evolutionary Statistics Toolkit for Simplified Sequence Analysis on Web with Client-Side Processing. bioRxiv, 2024-08. doi: https://doi.org/10.1101/2024.08.01.606148

Wave function

If you find this tool useful, you can cite:

Karagol, A., & Karagol, T. (2024). An Evolutionary Statistics Toolkit for Simplified Sequence Analysis on Web with Client-Side Processing. bioRxiv, 2024-08. doi: https://doi.org/10.1101/2024.08.01.606148

Pair frequencies

This tool utilizes array format for the calculation.

Example format:

download example file here

To convert your Clustal Alignment to array format:

Aln-Matrix tool

If you find this tool useful, you can cite:

Karagol, A., & Karagol, T. (2024). An Evolutionary Statistics Toolkit for Simplified Sequence Analysis on Web with Client-Side Processing. bioRxiv, 2024-08. doi: https://doi.org/10.1101/2024.08.01.606148