Evolutionary statistics toolkit

* This is a old version of the website. Web toolkit version 1.0.0. Click a tool to proceed:

RNA2Dmatch

This tool implements the Needleman-Wunsch algorithm for sequence alignment, and adapts it for RNA secondary structures.

If you find this tool useful, you can cite:

Karagöl, T., Karagöl, A. Basic Bioinformatics Toolkits (manuscript in preparation)
Needleman, S.B. and Wunsch, C.D. (1970) A General Method Applicable to the Search for Similarities in the Amino Acid Sequence of Two Proteins. Journal of Molecular Biology, 48, 443-453.
http://dx.doi.org/10.1016/0022-2836(70)90057-4

If you find this tool useful, you can cite:

Karagöl, T., Karagöl, A. Basic Bioinformatics Toolkits (manuscript in preparation)

or

Pearson, Karl (1905), "Das Fehlergesetz und seine Verallgemeinerungen durch Fechner und Pearson. A Rejoinder" [The Error Law and its Generalizations by Fechner and Pearson. A Rejoinder], Biometrika, 4 (1–2): 169–212,

If you find this tool useful, you can cite:

Karagöl, T., Karagöl, A. Basic Bioinformatics Toolkits (manuscript in preparation)

or

Karagöl A, Karagöl T, Smorodina E, Zhang S. Structural bioinformatics studies of glutamate transporters and their AlphaFold2 predicted water-soluble QTY variants and uncovering the natural mutations of L->Q, I->T, F->Y and Q->L, T->I and Y->F. PLoS One. 2024 Apr 10;19(4):e0289644. doi: 10.1371/journal.pone.0289644

*Google Colab notebooks and open source codes are available at GitHub:

RNA2Dmatch:

Kurtois coefficient calculator:

FASTA to SEQRES format converter: