RNA2Dmatch
This tool implements the Needleman-Wunsch algorithm for sequence alignment, and adapts it for RNA secondary structures.
If you find this tool useful, you can cite:
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Karagol, A., & Karagol, T. (2024). An Evolutionary Statistics Toolkit for Simplified Sequence Analysis on Web with Client-Side Processing. bioRxiv, 2024-08. doi: https://doi.org/10.1101/2024.08.01.606148
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Needleman, S.B. and Wunsch, C.D. (1970) A General Method Applicable to the Search for Similarities in the Amino Acid Sequence of Two Proteins. Journal of Molecular Biology, 48, 443-453. http://dx.doi.org/10.1016/0022-2836(70)90057-4
FASTA to SEQRES format converter
If you find this tool useful, you can cite:
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Karagol, A., & Karagol, T. (2024). An Evolutionary Statistics Toolkit for Simplified Sequence Analysis on Web with Client-Side Processing. bioRxiv, 2024-08. doi: https://doi.org/10.1101/2024.08.01.606148
or
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Karagöl A, Karagöl T, Smorodina E, Zhang S. Structural bioinformatics studies of glutamate transporters and their AlphaFold2 predicted water-soluble QTY variants and uncovering the natural mutations of L->Q, I->T, F->Y and Q->L, T->I and Y->F. PLoS One. 2024 Apr 10;19(4):e0289644. doi: 10.1371/journal.pone.0289644
Kurtosis coefficient calculator
If you find this tool useful, you can cite:
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Karagol, A., & Karagol, T. (2024). An Evolutionary Statistics Toolkit for Simplified Sequence Analysis on Web with Client-Side Processing. bioRxiv, 2024-08. doi: https://doi.org/10.1101/2024.08.01.606148
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Pearson, Karl (1905), "Das Fehlergesetz und seine Verallgemeinerungen durch Fechner und Pearson. A Rejoinder" [The Error Law and its Generalizations by Fechner and Pearson. A Rejoinder], Biometrika, 4 (1–2): 169–212,
Thank you for visiting this site. The toolkit is freely available for academic and non-commercial use.
Please contact for commercial usage.
All rights reserved @AlperKaragol, @Taner karagöl
*Google Colab notebooks and open source codes are available at:
RNA2Dmatch:
https://github.com/karagol-alper/RNA2Dmatch
Kurtosis coefficient calculator:
https://github.com/karagol-alper/Kurtosis-coefficient
FASTA to SEQRES format converter:
https://github.com/karagol-alper/SEQRES-format-converter